SNP Detail For rs16970672
1.Mapping Information
Human SNP ID rs16970672
Human chromosome chr17
Human SNP position 77948568
Pig chromosome chr12
Pig SNP position 3743566
2.Annotation Information
PubMed ID22005930
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22005930
StudyGenome-wide association study of Alzheimer__s disease with psychotic symptoms.
Disease/TraitPsychosis and Alzheimer__s disease
Initial sample1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families
Replication sampleNA
Region17q25.3
Chromosome idchr17
Chromosome position77948568
Reported geneAC015804.1
Mapped geneLOC105371909 - TNRC6C
Upstream gene id105371909
Downstream gene id57690
SNP gene ids
Upstream gene distance13220
Downstream gene distance55602
SNP risk allelers16970672-?
SNPsrs16970672
Merged0
SNP id current16970672
Contextintergenic_variant
Intergenic1
Allele frequency0.29
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.29
%95 Ci[NR]
PlatformIllumina [1847262] (imputed)
CNVN
Mapped traitAlzheimers disease, psychotic symptoms
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0005940
Study accessionGCST001285