SNP Detail For rs16966389
1.Mapping Information
Human SNP ID rs16966389
Human chromosome chr15
Human SNP position 38172673
Pig chromosome chr1
Pig SNP position 148650813
2.Annotation Information
PubMed ID23646285
JournalPeerJ
Linkwww.ncbi.nlm.nih.gov/pubmed/23646285
StudyGenome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia.
Disease/TraitHypersomnia (HLA-DQB1*06:02 negative)
Initial sample125 Japanese ancestry cases, 562 Japanese ancestry controls
Replication sample
Region15q14
Chromosome idchr15
Chromosome position38172673
Reported geneSPRED1
Mapped geneLOC101928227 - SPRED1
Upstream gene id101928227
Downstream gene id161742
SNP gene ids
Upstream gene distance110333
Downstream gene distance79414
SNP risk allelers16966389-G
SNPsrs16966389
Merged0
SNP id current16966389
Contextintron_variant
Intergenic1
Allele frequency0.642
P value0.0000007
Pvalue mlog6.15490195998574
P value text(dominant)
Or beta2.73
%95 Ci[1.82-4.10]
PlatformAffymetrix [508366] (imputed)
CNVN
Mapped traithypersomnia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005246
Study accessionGCST001971