Human SNP ID | rs16966389 |
---|---|
Human chromosome | chr15 |
Human SNP position | 38172673 |
Pig chromosome | chr1 |
Pig SNP position | 148650813 |
PubMed ID | 23646285 |
---|---|
Journal | PeerJ |
Link | www.ncbi.nlm.nih.gov/pubmed/23646285 |
Study | Genome-wide association study of HLA-DQB1*06:02 negative essential hypersomnia. |
Disease/Trait | Hypersomnia (HLA-DQB1*06:02 negative) |
Initial sample | 125 Japanese ancestry cases, 562 Japanese ancestry controls |
Replication sample | |
Region | 15q14 |
Chromosome id | chr15 |
Chromosome position | 38172673 |
Reported gene | SPRED1 |
Mapped gene | LOC101928227 - SPRED1 |
Upstream gene id | 101928227 |
Downstream gene id | 161742 |
SNP gene ids | |
Upstream gene distance | 110333 |
Downstream gene distance | 79414 |
SNP risk allele | rs16966389-G |
SNPs | rs16966389 |
Merged | 0 |
SNP id current | 16966389 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.642 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | (dominant) |
Or beta | 2.73 |
%95 Ci | [1.82-4.10] |
Platform | Affymetrix [508366] (imputed) |
CNV | N |
Mapped trait | hypersomnia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005246 |
Study accession | GCST001971 |