Human SNP ID | rs16962638 |
---|---|
Human chromosome | chr13 |
Human SNP position | 103534569 |
Pig chromosome | chr11 |
Pig SNP position | 79015186 |
PubMed ID | 21901158 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/21901158 |
Study | Genome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study. |
Disease/Trait | Insulin resistance/response |
Initial sample | 1,040 African American individuals |
Replication sample | NA |
Region | 13q33.1 |
Chromosome id | chr13 |
Chromosome position | 103534569 |
Reported gene | intergenic |
Mapped gene | LINC01309 - LOC105370340 |
Upstream gene id | 104326190 |
Downstream gene id | 105370340 |
SNP gene ids | |
Upstream gene distance | 106884 |
Downstream gene distance | 591330 |
SNP risk allele | rs16962638-C |
SNPs | rs16962638 |
Merged | 0 |
SNP id current | 16962638 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.11 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (HOMA-IR) |
Or beta | 15 |
%95 Ci | [8.00 - 22.00] % increase |
Platform | Affymetrix [872243] |
CNV | N |
Mapped trait | insulin resistance |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002614 |
Study accession | GCST001208 |