SNP Detail For rs16962638
1.Mapping Information
Human SNP ID rs16962638
Human chromosome chr13
Human SNP position 103534569
Pig chromosome chr11
Pig SNP position 79015186
2.Annotation Information
PubMed ID21901158
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/21901158
StudyGenome-wide detection of allele specific copy number variation associated with insulin resistance in African Americans from the HyperGEN study.
Disease/TraitInsulin resistance/response
Initial sample1,040 African American individuals
Replication sampleNA
Region13q33.1
Chromosome idchr13
Chromosome position103534569
Reported geneintergenic
Mapped geneLINC01309 - LOC105370340
Upstream gene id104326190
Downstream gene id105370340
SNP gene ids
Upstream gene distance106884
Downstream gene distance591330
SNP risk allelers16962638-C
SNPsrs16962638
Merged0
SNP id current16962638
Contextintergenic_variant
Intergenic1
Allele frequency0.11
P value0.000006
Pvalue mlog5.22184874961635
P value text(HOMA-IR)
Or beta15
%95 Ci[8.00 - 22.00] % increase
PlatformAffymetrix [872243]
CNVN
Mapped traitinsulin resistance
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002614
Study accessionGCST001208