SNP Detail For rs16953622
1.Mapping Information
Human SNP ID rs16953622
Human chromosome chr13
Human SNP position 96856485
Pig chromosome chr11
Pig SNP position 73214149
2.Annotation Information
PubMed ID24684796
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/24684796
StudyHeritability and genetic association analysis of cognition in the Diabetes Heart Study.
Disease/TraitCognitive function
Initial sample423 type 2 diabetes cases and 127 unaffected siblings from 257 families
Replication sampleNA
Region13q32.1
Chromosome idchr13
Chromosome position96856485
Reported geneHS6ST3
Mapped geneHS6ST3 - HSP90AB6P
Upstream gene id266722
Downstream gene id541611
SNP gene ids
Upstream gene distance16923
Downstream gene distance26934
SNP risk allelers16953622-T
SNPsrs16953622
Merged0
SNP id current16953622
Contextintergenic_variant
Intergenic1
Allele frequency0.015
P value0.000007
Pvalue mlog5.15490195998574
P value text(3MSE)
Or beta6.9917
%95 Ci[3.97-10.01] unit decrease
PlatformAffymetrix [> 371951] (imputed)
CNVN
Mapped traitcognition
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003925
Study accessionGCST002386