SNP Detail For rs16953002
1.Mapping Information
Human SNP ID rs16953002
Human chromosome chr16
Human SNP position 54080912
Pig chromosome chr6
Pig SNP position 28328276
2.Annotation Information
PubMed ID23455637
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23455637
StudyA variant in FTO shows association with melanoma risk not due to BMI.
Disease/TraitMelanoma
Initial sample1,353 European ancestry cases, 3,566 European ancestry controls
Replication sample12,313 European ancestry cases, Up to 55,667 European ancestry controls
Region16q12.2
Chromosome idchr16
Chromosome position54080912
Reported geneFTO
Mapped geneFTO
Upstream gene id
Downstream gene id
SNP gene ids79068
Upstream gene distance
Downstream gene distance
SNP risk allelers16953002-A
SNPsrs16953002
Merged0
SNP id current16953002
Contextintron_variant
Intergenic0
Allele frequency0.17
P value0.000000000004
Pvalue mlog11.397940008672
P value text
Or beta1.16
%95 Ci[1.11-1.20]
PlatformIllumina [2600000] (imputed)
CNVN
Mapped traitmelanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000756
Study accessionGCST001886