Human SNP ID | rs16953002 |
---|---|
Human chromosome | chr16 |
Human SNP position | 54080912 |
Pig chromosome | chr6 |
Pig SNP position | 28328276 |
PubMed ID | 23455637 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23455637 |
Study | A variant in FTO shows association with melanoma risk not due to BMI. |
Disease/Trait | Melanoma |
Initial sample | 1,353 European ancestry cases, 3,566 European ancestry controls |
Replication sample | 12,313 European ancestry cases, Up to 55,667 European ancestry controls |
Region | 16q12.2 |
Chromosome id | chr16 |
Chromosome position | 54080912 |
Reported gene | FTO |
Mapped gene | FTO |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79068 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16953002-A |
SNPs | rs16953002 |
Merged | 0 |
SNP id current | 16953002 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.17 |
P value | 0.000000000004 |
Pvalue mlog | 11.397940008672 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.11-1.20] |
Platform | Illumina [2600000] (imputed) |
CNV | N |
Mapped trait | melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000756 |
Study accession | GCST001886 |