SNP Detail For rs16946160
1.Mapping Information
Human SNP ID rs16946160
Human chromosome chr13
Human SNP position 91551559
Pig chromosome chr11
Pig SNP position 66782185
2.Annotation Information
PubMed ID21441931
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21441931
StudyCommon variation in GPC5 is associated with acquired nephrotic syndrome.
Disease/TraitNephrotic syndrome (acquired)
Initial sample195 Japanese ancestry cases, 1,546 Japanese ancestry controls
Replication sample662 Japanese ancestry cases, 4,919 Japanese ancestry controls
Region13q31.3
Chromosome idchr13
Chromosome position91551559
Reported geneGPC5
Mapped geneGPC5
Upstream gene id
Downstream gene id
SNP gene ids2262
Upstream gene distance
Downstream gene distance
SNP risk allelers16946160-A
SNPsrs16946160
Merged0
SNP id current16946160
Contextintron_variant
Intergenic0
Allele frequency0.17
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta1.39
%95 Ci[1.22-1.57]
PlatformPerlegen [205203]
CNVN
Mapped traitnephrotic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004255
Study accessionGCST001018