Human SNP ID | rs16946160 |
---|---|
Human chromosome | chr13 |
Human SNP position | 91551559 |
Pig chromosome | chr11 |
Pig SNP position | 66782185 |
PubMed ID | 21441931 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21441931 |
Study | Common variation in GPC5 is associated with acquired nephrotic syndrome. |
Disease/Trait | Nephrotic syndrome (acquired) |
Initial sample | 195 Japanese ancestry cases, 1,546 Japanese ancestry controls |
Replication sample | 662 Japanese ancestry cases, 4,919 Japanese ancestry controls |
Region | 13q31.3 |
Chromosome id | chr13 |
Chromosome position | 91551559 |
Reported gene | GPC5 |
Mapped gene | GPC5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2262 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16946160-A |
SNPs | rs16946160 |
Merged | 0 |
SNP id current | 16946160 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.17 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 1.39 |
%95 Ci | [1.22-1.57] |
Platform | Perlegen [205203] |
CNV | N |
Mapped trait | nephrotic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004255 |
Study accession | GCST001018 |