SNP Detail For rs16944158
1.Mapping Information
Human SNP ID rs16944158
Human chromosome chr16
Human SNP position 49618868
Pig chromosome chr6
Pig SNP position 30870981
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region16q12.1
Chromosome idchr16
Chromosome position49618868
Reported geneNR
Mapped geneZNF423
Upstream gene id
Downstream gene id
SNP gene ids23090
Upstream gene distance
Downstream gene distance
SNP risk allelers16944158-G
SNPsrs16944158
Merged0
SNP id current16944158
Contextintron_variant
Intergenic0
Allele frequency0.271065156389634
P value0.000004
Pvalue mlog5.39794000867203
P value text(IGP74)
Or beta0.162
%95 Ci[0.093-0.231] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848