Human SNP ID | rs16940212 |
---|---|
Human chromosome | chr15 |
Human SNP position | 58401821 |
Pig chromosome | chr1 |
Pig SNP position | 125698010 |
PubMed ID | 21909109 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21909109 |
Study | Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. |
Disease/Trait | HDL cholesterol |
Initial sample | 12,545 Korean ancestry individuals |
Replication sample | Up to 30,395 East Asian ancestry individuals |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58401821 |
Reported gene | intergenic |
Mapped gene | LOC102724766 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 102724766 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16940212-T |
SNPs | rs16940212 |
Merged | 0 |
SNP id current | 16940212 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 1E-24 |
Pvalue mlog | 24 |
P value text | |
Or beta | 0.0222 |
%95 Ci | [0.018-0.027] mg/dL increase |
Platform | Affymetrix [~ 2200000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST001237 |