SNP Detail For rs16940212
1.Mapping Information
Human SNP ID rs16940212
Human chromosome chr15
Human SNP position 58401821
Pig chromosome chr1
Pig SNP position 125698010
2.Annotation Information
PubMed ID21909109
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21909109
StudyLarge-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.
Disease/TraitHDL cholesterol
Initial sample12,545 Korean ancestry individuals
Replication sampleUp to 30,395 East Asian ancestry individuals
Region15q21.3
Chromosome idchr15
Chromosome position58401821
Reported geneintergenic
Mapped geneLOC102724766
Upstream gene id
Downstream gene id
SNP gene ids102724766
Upstream gene distance
Downstream gene distance
SNP risk allelers16940212-T
SNPsrs16940212
Merged0
SNP id current16940212
Contextintron_variant
Intergenic0
Allele frequency0.34
P value1E-24
Pvalue mlog24
P value text
Or beta0.0222
%95 Ci[0.018-0.027] mg/dL increase
PlatformAffymetrix [~ 2200000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST001237