Human SNP ID | rs16940186 |
---|---|
Human chromosome | chr16 |
Human SNP position | 85976134 |
Pig chromosome | chr6 |
Pig SNP position | 3320904 |
PubMed ID | 23511034 |
---|---|
Journal | Inflamm Bowel Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/23511034 |
Study | Genome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians. |
Disease/Trait | Ulcerative colitis |
Initial sample | 388 Korean ancestry cases, 739 Korean ancestry controls |
Replication sample | 417 Korean ancestry cases, 732 Korean ancestry controls |
Region | 16q24.1 |
Chromosome id | chr16 |
Chromosome position | 85976134 |
Reported gene | IRF8 |
Mapped gene | LOC105371388 - LOC105371389 |
Upstream gene id | 105371388 |
Downstream gene id | 105371389 |
SNP gene ids | |
Upstream gene distance | 26952 |
Downstream gene distance | 71685 |
SNP risk allele | rs16940186-G |
SNPs | rs16940186 |
Merged | 0 |
SNP id current | 16940186 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.21 |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 1.56 |
%95 Ci | [1.36-1.80] |
Platform | Illumina [581060] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST001938 |