SNP Detail For rs16940186
1.Mapping Information
Human SNP ID rs16940186
Human chromosome chr16
Human SNP position 85976134
Pig chromosome chr6
Pig SNP position 3320904
2.Annotation Information
PubMed ID23511034
JournalInflamm Bowel Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/23511034
StudyGenome-wide association study of ulcerative colitis in Koreans suggests extensive overlapping of genetic susceptibility with Caucasians.
Disease/TraitUlcerative colitis
Initial sample388 Korean ancestry cases, 739 Korean ancestry controls
Replication sample417 Korean ancestry cases, 732 Korean ancestry controls
Region16q24.1
Chromosome idchr16
Chromosome position85976134
Reported geneIRF8
Mapped geneLOC105371388 - LOC105371389
Upstream gene id105371388
Downstream gene id105371389
SNP gene ids
Upstream gene distance26952
Downstream gene distance71685
SNP risk allelers16940186-G
SNPsrs16940186
Merged0
SNP id current16940186
Contextintergenic_variant
Intergenic1
Allele frequency0.21
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta1.56
%95 Ci[1.36-1.80]
PlatformIllumina [581060]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST001938