SNP Detail For rs16932455
1.Mapping Information
Human SNP ID rs16932455
Human chromosome chr11
Human SNP position 16018629
Pig chromosome chr2
Pig SNP position 46164616
2.Annotation Information
PubMed ID22864933
JournalCancer
Linkwww.ncbi.nlm.nih.gov/pubmed/22864933
StudyIdentification of novel germline polymorphisms governing capecitabine sensitivity.
Disease/TraitCapecitabine sensitivity
Initial sampleUp to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines
Replication sampleNA
Region11p15.2
Chromosome idchr11
Chromosome position16018629
Reported geneSOX6
Mapped geneSOX6
Upstream gene id
Downstream gene id
SNP gene ids55553
Upstream gene distance
Downstream gene distance
SNP risk allelers16932455-?
SNPsrs16932455
Merged0
SNP id current16932455
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformNR [~ 2000000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001368