Human SNP ID | rs16930685 |
---|---|
Human chromosome | chr11 |
Human SNP position | 37849431 |
Pig chromosome | chr2 |
Pig SNP position | 25495772 |
PubMed ID | 21478494 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21478494 |
Study | Genome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk. |
Disease/Trait | Cutaneous nevi |
Initial sample | 9,136 European ancestry individuals |
Replication sample | 3,581 European ancestry individuals |
Region | 11p12 |
Chromosome id | chr11 |
Chromosome position | 37849431 |
Reported gene | C11orf74 |
Mapped gene | RPL7AP56 - LOC105376633 |
Upstream gene id | 100271536 |
Downstream gene id | 105376633 |
SNP gene ids | |
Upstream gene distance | 122941 |
Downstream gene distance | 89170 |
SNP risk allele | rs16930685-C |
SNPs | rs16930685 |
Merged | 0 |
SNP id current | 16930685 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.1 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.1 |
%95 Ci | [0.06-0.14] unit increase |
Platform | Affymetrix, Illumina [2318094] (imputed) |
CNV | N |
Mapped trait | nevus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000625 |
Study accession | GCST001034 |