SNP Detail For rs16930685
1.Mapping Information
Human SNP ID rs16930685
Human chromosome chr11
Human SNP position 37849431
Pig chromosome chr2
Pig SNP position 25495772
2.Annotation Information
PubMed ID21478494
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21478494
StudyGenome-wide association study identifies nidogen 1 (NID1) as a susceptibility locus to cutaneous nevi and melanoma risk.
Disease/TraitCutaneous nevi
Initial sample9,136 European ancestry individuals
Replication sample3,581 European ancestry individuals
Region11p12
Chromosome idchr11
Chromosome position37849431
Reported geneC11orf74
Mapped geneRPL7AP56 - LOC105376633
Upstream gene id100271536
Downstream gene id105376633
SNP gene ids
Upstream gene distance122941
Downstream gene distance89170
SNP risk allelers16930685-C
SNPsrs16930685
Merged0
SNP id current16930685
Contextintergenic_variant
Intergenic1
Allele frequency0.1
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.1
%95 Ci[0.06-0.14] unit increase
PlatformAffymetrix, Illumina [2318094] (imputed)
CNVN
Mapped traitnevus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000625
Study accessionGCST001034