Human SNP ID | rs16923647 |
---|---|
Human chromosome | chr12 |
Human SNP position | 21298461 |
Pig chromosome | chr5 |
Pig SNP position | 55379934 |
PubMed ID | 19901119 |
---|---|
Journal | J Clin Oncol |
Link | www.ncbi.nlm.nih.gov/pubmed/19901119 |
Study | Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects. |
Disease/Trait | Methotrexate phramacokinetics (acute lymphoblastic leukemia) |
Initial sample | 315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases |
Replication sample | NA |
Region | 12p12.1 |
Chromosome id | chr12 |
Chromosome position | 21298461 |
Reported gene | SLCO1A2 |
Mapped gene | SLCO1A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6579 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16923647-T |
SNPs | rs16923647 |
Merged | 0 |
SNP id current | 16923647 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | [NR] |
Platform | Affymetrix [398699] |
CNV | N |
Mapped trait | response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST000523 |