SNP Detail For rs16923647
1.Mapping Information
Human SNP ID rs16923647
Human chromosome chr12
Human SNP position 21298461
Pig chromosome chr5
Pig SNP position 55379934
2.Annotation Information
PubMed ID19901119
JournalJ Clin Oncol
Linkwww.ncbi.nlm.nih.gov/pubmed/19901119
StudyGermline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.
Disease/TraitMethotrexate phramacokinetics (acute lymphoblastic leukemia)
Initial sample315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases
Replication sampleNA
Region12p12.1
Chromosome idchr12
Chromosome position21298461
Reported geneSLCO1A2
Mapped geneSLCO1A2
Upstream gene id
Downstream gene id
SNP gene ids6579
Upstream gene distance
Downstream gene distance
SNP risk allelers16923647-T
SNPsrs16923647
Merged0
SNP id current16923647
Contextintron_variant
Intergenic0
Allele frequency0.1
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci[NR]
PlatformAffymetrix [398699]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST000523