SNP Detail For rs16912725
1.Mapping Information
Human SNP ID rs16912725
Human chromosome chr9
Human SNP position 28359784
Pig chromosome chr10
Pig SNP position 42641539
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region9p21.1
Chromosome idchr9
Chromosome position28359784
Reported geneLINGO2
Mapped geneLINGO2
Upstream gene id
Downstream gene id
SNP gene ids158038
Upstream gene distance
Downstream gene distance
SNP risk allelers16912725-A
SNPsrs16912725
Merged0
SNP id current16912725
Contextintron_variant
Intergenic0
Allele frequency0.004
P value0.000002
Pvalue mlog5.69897000433601
P value text(IGF1 free )
Or beta0.04
%95 Ci[NR] ng/mL increase
PlatformIllumina [899892]
CNVN
Mapped traitIGF-1 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004627
Study accessionGCST001762