SNP Detail For rs16904179
1.Mapping Information
Human SNP ID rs16904179
Human chromosome chr8
Human SNP position 129946705
Pig chromosome chr4
Pig SNP position 10759814
2.Annotation Information
PubMed ID23726511
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23726511
StudyGenome-wide association study identifies new susceptibility loci for posttraumatic stress disorder.
Disease/TraitPost-traumatic stress disorder (asjusted for relatedness)
Initial sampleup to 308 European ancestry cases, up to 1,538 European ancestry controls, up to 456 African American cases, up to 2,936 African American controls
Replication sampleNA
Region8q24.21
Chromosome idchr8
Chromosome position129946705
Reported geneFAM49B
Mapped geneFAM49B
Upstream gene id
Downstream gene id
SNP gene ids51571
Upstream gene distance
Downstream gene distance
SNP risk allelers16904179-?
SNPsrs16904179
Merged0
SNP id current16904179
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text(Whole cohort; AA)
Or beta
%95 Ci
PlatformIllumina [up to 871502]
CNVN
Mapped traitpost-traumatic stress disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001358
Study accessionGCST002037