SNP Detail For rs16902104
1.Mapping Information
Human SNP ID rs16902104
Human chromosome chr8
Human SNP position 127328663
Pig chromosome chr4
Pig SNP position 13060322
2.Annotation Information
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region8q24.21
Chromosome idchr8
Chromosome position127328663
Reported geneNR
Mapped geneCASC21, CASC8
Upstream gene id
Downstream gene id
SNP gene ids103021164, 727677
Upstream gene distance
Downstream gene distance
SNP risk allelers16902104-T
SNPsrs16902104
Merged
SNP id current16902104
Contextintron_variant
Intergenic0
Allele frequency0.14
P value0.0000000005
Pvalue mlog9.30102999566398
P value text(European)
Or beta1.21
%95 Ci[1.14-1.28]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region8q24.21
Chromosome idchr8
Chromosome position127328663
Reported geneNR
Mapped geneCASC21, CASC8
Upstream gene id
Downstream gene id
SNP gene ids103021164, 727677
Upstream gene distance
Downstream gene distance
SNP risk allelers16902104-T
SNPsrs16902104
Merged
SNP id current16902104
Contextintron_variant
Intergenic0
Allele frequency0.14
P value0.000000001
Pvalue mlog9
P value text
Or beta1.18
%95 Ci[1.12-1.25]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944