Human SNP ID | rs1689800 |
---|---|
Human chromosome | chr1 |
Human SNP position | 182199750 |
Pig chromosome | chr9 |
Pig SNP position | 135780321 |
PubMed ID | 20686565 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20686565 |
Study | Biological, clinical and population relevance of 95 loci for blood lipids. |
Disease/Trait | HDL cholesterol |
Initial sample | 99,900 European ancestry individuals |
Replication sample | NA |
Region | 1q25.3 |
Chromosome id | chr1 |
Chromosome position | 182199750 |
Reported gene | ZNF648 |
Mapped gene | LOC105371641 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371641 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1689800-G |
SNPs | rs1689800 |
Merged | 0 |
SNP id current | 1689800 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.35 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 0.47 |
%95 Ci | [0.31-0.63] mg/dL decrease |
Platform | Affymetrix, Illumina, Perlegen [~ 2600000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000755 |
PubMed ID | 24097068 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 1q25.3 |
Chromosome id | chr1 |
Chromosome position | 182199750 |
Reported gene | ZNF648 |
Mapped gene | LOC105371641 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105371641 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1689800-G |
SNPs | rs1689800 |
Merged | 0 |
SNP id current | 1689800 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.35 |
P value | 5E-20 |
Pvalue mlog | 19.3010299956639 |
P value text | |
Or beta | 0.034 |
%95 Ci | [NR] unit decrease |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002223 |