SNP Detail For rs16894446
1.Mapping Information
Human SNP ID rs16894446
Human chromosome chr5
Human SNP position 65841633
Pig chromosome chr16
Pig SNP position 47696265
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region5q12.3
Chromosome idchr5
Chromosome position65841633
Reported geneNR
Mapped geneNLN - ERBB2IP
Upstream gene id57486
Downstream gene id55914
SNP gene ids
Upstream gene distance12350
Downstream gene distance84832
SNP risk allelers16894446-T
SNPsrs16894446
Merged0
SNP id current16894446
Contextintron_variant
Intergenic1
Allele frequency0.026
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Trans/cis-18:2, EA)
Or beta0.0167
%95 Ci[0.01-0.023] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans/cis-18:2 fatty acid measurement, trans fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006825, http://www.ebi.ac.uk/efo/EFO_0006821
Study accessionGCST002721