SNP Detail For rs16893526
1.Mapping Information
Human SNP ID rs16893526
Human chromosome chr6
Human SNP position 81805598
Pig chromosome chr1
Pig SNP position 95040536
2.Annotation Information
PubMed ID21606135
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21606135
StudyA genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease.
Disease/TraitCoronary heart disease
Initial sample2,078 European ancestry cases, 2,953 European ancestry controls
Replication sample19,350 European ancestry cases, 35,408 European ancestry controls
Region6q14.1
Chromosome idchr6
Chromosome position81805598
Reported geneintergenic
Mapped geneLOC105377873 - LINC01526
Upstream gene id105377873
Downstream gene id101928770
SNP gene ids
Upstream gene distance37183
Downstream gene distance7688
SNP risk allelers16893526-G
SNPsrs16893526
Merged0
SNP id current16893526
Contextintergenic_variant
Intergenic1
Allele frequency0.91
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.13
%95 Ci[1.07-1.21]
PlatformAffymetrix [608247]
CNVN
Mapped traitcoronary heart disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001645
Study accessionGCST001079