SNP Detail For rs16892766
1.Mapping Information
Human SNP ID rs16892766
Human chromosome chr8
Human SNP position 116618444
Pig chromosome chr4
Pig SNP position 23472639
2.Annotation Information
PubMed ID18372905
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18372905
StudyA genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3.
Disease/TraitColorectal cancer
Initial sample922 European ancestry cases, 927 European ancestry controls
Replication sample17,089 European ancestry cases, 16,862 European ancestry controls, 783 cases, 664 controls
Region8q23.3
Chromosome idchr8
Chromosome position116618444
Reported geneEIF3H
Mapped geneLOC105375712 - EIF3H
Upstream gene id105375712
Downstream gene id8667
SNP gene ids
Upstream gene distance3145
Downstream gene distance26372
SNP risk allelers16892766-A
SNPsrs16892766
Merged0
SNP id current16892766
Contextregulatory_region_variant
Intergenic1
Allele frequency0.07
P value0.000000000000000003
Pvalue mlog17.5228787452803
P value text
Or beta1.27
%95 Ci[1.20-1.34]
PlatformIllumina [547647]
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST000169
PubMed ID21761138
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21761138
StudyMeta-analysis of new genome-wide association studies of colorectal cancer risk.
Disease/TraitColorectal cancer
Initial sample2,906 European ancestry cases, 3,416 European ancestry controls
Replication sample8,161 European ancestry cases, 9,101 European ancestry controls
Region8q23.3
Chromosome idchr8
Chromosome position116618444
Reported geneEIF3H
Mapped geneLOC105375712 - EIF3H
Upstream gene id105375712
Downstream gene id8667
SNP gene ids
Upstream gene distance3145
Downstream gene distance26372
SNP risk allelers16892766-?
SNPsrs16892766
Merged0
SNP id current16892766
Contextregulatory_region_variant
Intergenic1
Allele frequency0.08
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.24
%95 Ci[1.14-1.34]
PlatformIllumina [378739]
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001161
PubMed ID26151821
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26151821
StudyGenome-wide association study of colorectal cancer identifies six new susceptibility loci.
Disease/TraitColorectal cancer
Initial sample18,299 European ancestry cases, 19,656 European ancestry controls
Replication sample4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls
Region8q23.3
Chromosome idchr8
Chromosome position116618444
Reported geneEIF3H
Mapped geneLOC105375712 - EIF3H
Upstream gene id105375712
Downstream gene id8667
SNP gene ids
Upstream gene distance3145
Downstream gene distance26372
SNP risk allelers16892766-C
SNPsrs16892766
Merged0
SNP id current16892766
Contextregulatory_region_variant
Intergenic1
Allele frequency0.1
P value0.000000000003
Pvalue mlog11.5228787452803
P value text
Or beta1.2048193
%95 Ci[1.15-1.26]
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST003017