Human SNP ID | rs16886113 |
---|---|
Human chromosome | chr5 |
Human SNP position | 56699208 |
Pig chromosome | chr16 |
Pig SNP position | 38022293 |
PubMed ID | 24493630 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/24493630 |
Study | A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age. |
Disease/Trait | Breast cancer (early onset) |
Initial sample | 3,523 European ancestry young female cases, 2,702 European ancestry young female controls |
Replication sample | 3,470 European ancestry young female cases, 5,475 European ancestry young female controls |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56699208 |
Reported gene | MAP3K1 |
Mapped gene | LOC101928448 - LOC105378979 |
Upstream gene id | 101928448 |
Downstream gene id | 105378979 |
SNP gene ids | |
Upstream gene distance | 92976 |
Downstream gene distance | 71119 |
SNP risk allele | rs16886113-? |
SNPs | rs16886113 |
Merged | 0 |
SNP id current | 16886113 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.08 |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.23-1.47] |
Platform | Illumina [1265548] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST002346 |