SNP Detail For rs16886113
1.Mapping Information
Human SNP ID rs16886113
Human chromosome chr5
Human SNP position 56699208
Pig chromosome chr16
Pig SNP position 38022293
2.Annotation Information
PubMed ID24493630
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/24493630
StudyA genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
Disease/TraitBreast cancer (early onset)
Initial sample3,523 European ancestry young female cases, 2,702 European ancestry young female controls
Replication sample3,470 European ancestry young female cases, 5,475 European ancestry young female controls
Region5q11.2
Chromosome idchr5
Chromosome position56699208
Reported geneMAP3K1
Mapped geneLOC101928448 - LOC105378979
Upstream gene id101928448
Downstream gene id105378979
SNP gene ids
Upstream gene distance92976
Downstream gene distance71119
SNP risk allelers16886113-?
SNPsrs16886113
Merged0
SNP id current16886113
Contextregulatory_region_variant
Intergenic1
Allele frequency0.08
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta1.35
%95 Ci[1.23-1.47]
PlatformIllumina [1265548] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST002346