SNP Detail For rs1688589
1.Mapping Information
Human SNP ID rs1688589
Human chromosome chr1
Human SNP position 101564286
Pig chromosome chr4
Pig SNP position 128546536
2.Annotation Information
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitPlasma omega-6 polyunsaturated fatty acid levels (arachidonic acid)
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region1p21.2
Chromosome idchr1
Chromosome position101564286
Reported geneNR
Mapped geneLINC01307 - LOC105378872
Upstream gene id104355286
Downstream gene id105378872
SNP gene ids
Upstream gene distance186973
Downstream gene distance75274
SNP risk allelers1688589-G
SNPsrs1688589
Merged
SNP id current1688589
Contextintergenic_variant
Intergenic1
Allele frequency0.8998
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.0712
%95 Ci[0.042-0.1] unit increase
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped traitarachidonic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006808
Study accessionGCST003236