Human SNP ID | rs1688589 |
---|---|
Human chromosome | chr1 |
Human SNP position | 101564286 |
Pig chromosome | chr4 |
Pig SNP position | 128546536 |
PubMed ID | 26584805 |
---|---|
Journal | Genes Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/26584805 |
Study | A genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population. |
Disease/Trait | Plasma omega-6 polyunsaturated fatty acid levels (arachidonic acid) |
Initial sample | 717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls |
Replication sample | NA |
Region | 1p21.2 |
Chromosome id | chr1 |
Chromosome position | 101564286 |
Reported gene | NR |
Mapped gene | LINC01307 - LOC105378872 |
Upstream gene id | 104355286 |
Downstream gene id | 105378872 |
SNP gene ids | |
Upstream gene distance | 186973 |
Downstream gene distance | 75274 |
SNP risk allele | rs1688589-G |
SNPs | rs1688589 |
Merged | |
SNP id current | 1688589 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.8998 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.0712 |
%95 Ci | [0.042-0.1] unit increase |
Platform | Illumina [up to 1980188] (imputed) |
CNV | N |
Mapped trait | arachidonic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006808 |
Study accession | GCST003236 |