SNP Detail For rs16885294
1.Mapping Information
Human SNP ID rs16885294
Human chromosome chr6
Human SNP position 54400598
Pig chromosome JH118902-1
Pig SNP position 72637
2.Annotation Information
PubMed ID20923822
JournalGenome Res
Linkwww.ncbi.nlm.nih.gov/pubmed/20923822
StudyRadiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.
Disease/TraitRadiation response
Initial sample93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines
Replication sampleNA
Region6p12.1
Chromosome idchr6
Chromosome position54400598
Reported geneTINAG
Mapped geneTINAG - CLNS1AP1
Upstream gene id27283
Downstream gene id1204
SNP gene ids
Upstream gene distance10446
Downstream gene distance83901
SNP risk allelers16885294-?
SNPsrs16885294
Merged0
SNP id current16885294
Contextintergenic_variant
Intergenic1
Allele frequency0.07
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [1348798]
CNVN
Mapped traitresponse to radiation
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0009314
Study accessionGCST000823