Human SNP ID | rs16885294 |
---|---|
Human chromosome | chr6 |
Human SNP position | 54400598 |
Pig chromosome | JH118902-1 |
Pig SNP position | 72637 |
PubMed ID | 20923822 |
---|---|
Journal | Genome Res |
Link | www.ncbi.nlm.nih.gov/pubmed/20923822 |
Study | Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines. |
Disease/Trait | Radiation response |
Initial sample | 93 African American human lymphoblastoid cell lines, 89 European ancestry human lymphoblastoid cell lines, 95 Han Chinese ancestry human lymphoblastoid cell lines |
Replication sample | NA |
Region | 6p12.1 |
Chromosome id | chr6 |
Chromosome position | 54400598 |
Reported gene | TINAG |
Mapped gene | TINAG - CLNS1AP1 |
Upstream gene id | 27283 |
Downstream gene id | 1204 |
SNP gene ids | |
Upstream gene distance | 10446 |
Downstream gene distance | 83901 |
SNP risk allele | rs16885294-? |
SNPs | rs16885294 |
Merged | 0 |
SNP id current | 16885294 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.07 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [1348798] |
CNV | N |
Mapped trait | response to radiation |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0009314 |
Study accession | GCST000823 |