SNP Detail For rs16876394
1.Mapping Information
Human SNP ID rs16876394
Human chromosome chr5
Human SNP position 79050946
Pig chromosome chr2
Pig SNP position 89491509
2.Annotation Information
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79050946
Reported geneBHMT
Mapped geneDMGDH
Upstream gene id
Downstream gene id
SNP gene ids29958
Upstream gene distance
Downstream gene distance
SNP risk allelers16876394-T
SNPsrs16876394
Merged0
SNP id current16876394
Contextintron_variant
Intergenic0
Allele frequency0.9
P value1E-19
Pvalue mlog19
P value text(betaine)
Or beta0.03
%95 Ci[0.024-0.036] unit increase
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443