SNP Detail For rs16865258
1.Mapping Information
Human SNP ID rs16865258
Human chromosome chr3
Human SNP position 190279607
Pig chromosome chr13
Pig SNP position 136948148
2.Annotation Information
PubMed ID21107309
JournalNeuropsychopharmacology
Linkwww.ncbi.nlm.nih.gov/pubmed/21107309
StudyGenome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia.
Disease/TraitResponse to antipsychotic treatment in schizophrenia (working memory)
Initial sample738 European ancestry, African American, and other ancestry cases
Replication sampleNA
Region3q28
Chromosome idchr3
Chromosome position190279607
Reported geneCLDN1
Mapped geneP3H2-AS1 - CLDN1
Upstream gene id101929152
Downstream gene id9076
SNP gene ids
Upstream gene distance134761
Downstream gene distance26094
SNP risk allelers16865258-?
SNPsrs16865258
Merged0
SNP id current16865258
Contextintergenic_variant
Intergenic1
Allele frequency0.02
P value0.000002
Pvalue mlog5.69897000433601
P value text(quetiapine)
Or beta
%95 Ci
PlatformAffymetrix [492900]
CNVN
Mapped traitshort-term memory
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004335
Study accessionGCST000883