SNP Detail For rs16861326
1.Mapping Information
Human SNP ID rs16861326
Human chromosome chr1
Human SNP position 17967993
Pig chromosome chr6
Pig SNP position 70826761
2.Annotation Information
PubMed ID20932654
JournalInt J Radiat Oncol Biol Phys
Linkwww.ncbi.nlm.nih.gov/pubmed/20932654
StudyGenome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with the development of erectile dysfunction in African-American men after radiotherapy for prostate cancer.
Disease/TraitErectile dysfunction and prostate cancer treatment
Initial sample27 African American cases, 52 African American controls
Replication sampleNA
Region1p36.13
Chromosome idchr1
Chromosome position17967993
Reported geneIGSF21
Mapped geneACTL8 - LOC105376809
Upstream gene id81569
Downstream gene id105376809
SNP gene ids
Upstream gene distance140930
Downstream gene distance32429
SNP risk allelers16861326-?
SNPsrs16861326
Merged0
SNP id current16861326
Contextintergenic_variant
Intergenic1
Allele frequency0.02
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta17.85
%95 Ci[NR]
PlatformAffymetrix [512497]
CNVN
Mapped traitresponse to radiation, prostate carcinoma, erectile dysfunction
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0009314, http://www.ebi.ac.uk/efo/EFO_0001663, http://www.ebi.ac.uk/efo/EFO_0004234
Study accessionGCST000824