SNP Detail For rs16859140
1.Mapping Information
Human SNP ID rs16859140
Human chromosome chr3
Human SNP position 112073747
Pig chromosome chr13
Pig SNP position 157359881
2.Annotation Information
PubMed ID24478790
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24478790
StudyGenome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study.
Disease/TraitTelomere length
Initial sample4,829 European ancestry individuals from 586 families with exceptional longevity
Replication sampleNA
Region3q13.2
Chromosome idchr3
Chromosome position112073747
Reported geneTMPRSS7
Mapped geneTMPRSS7
Upstream gene id
Downstream gene id
SNP gene ids344805
Upstream gene distance
Downstream gene distance
SNP risk allelers16859140-C
SNPsrs16859140
Merged0
SNP id current16859140
Contextintron_variant
Intergenic0
Allele frequency0.282
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci[NR]
PlatformIllumina [9250000] (imputed)
CNVN
Mapped traittelomere length
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004505
Study accessionGCST002336