Human SNP ID | rs16857609 |
---|---|
Human chromosome | chr2 |
Human SNP position | 217431785 |
Pig chromosome | chr15 |
Pig SNP position | 132591037 |
PubMed ID | 23535729 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535729 |
Study | Large-scale genotyping identifies 41 new loci associated with breast cancer risk. |
Disease/Trait | Breast cancer |
Initial sample | 10,052 European ancestry cases, 12,575 European ancestry controls |
Replication sample | 45,290 European ancestry cases, 41,880 European ancestry controls |
Region | 2q35 |
Chromosome id | chr2 |
Chromosome position | 217431785 |
Reported gene | DIRC3 |
Mapped gene | DIRC3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 729582 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16857609-T |
SNPs | rs16857609 |
Merged | 0 |
SNP id current | 16857609 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.26 |
P value | 0.000000000000001 |
Pvalue mlog | 15 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.06-1.10] |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST001937 |