SNP Detail For rs16857609
1.Mapping Information
Human SNP ID rs16857609
Human chromosome chr2
Human SNP position 217431785
Pig chromosome chr15
Pig SNP position 132591037
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region2q35
Chromosome idchr2
Chromosome position217431785
Reported geneDIRC3
Mapped geneDIRC3
Upstream gene id
Downstream gene id
SNP gene ids729582
Upstream gene distance
Downstream gene distance
SNP risk allelers16857609-T
SNPsrs16857609
Merged0
SNP id current16857609
Contextintron_variant
Intergenic0
Allele frequency0.26
P value0.000000000000001
Pvalue mlog15
P value text
Or beta1.08
%95 Ci[1.06-1.10]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937