SNP Detail For rs16856202
1.Mapping Information
Human SNP ID rs16856202
Human chromosome chr1
Human SNP position 232019405
Pig chromosome chr14
Pig SNP position 63076664
2.Annotation Information
PubMed ID19451621
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/19451621
StudyReduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.
Disease/TraitAmyotrophic lateral sclerosis
Initial sample1,821 cases, 2,258 controls
Replication sample538 cases, 556 controls
Region1q42.2
Chromosome idchr1
Chromosome position232019405
Reported geneDISC1
Mapped geneDISC1, TSNAX-DISC1
Upstream gene id
Downstream gene id
SNP gene ids27185, 100303453
Upstream gene distance
Downstream gene distance
SNP risk allelers16856202-C
SNPsrs16856202
Merged0
SNP id current16856202
Contextintron_variant
Intergenic0
Allele frequency0.04
P value0.000008
Pvalue mlog5.09691001300805
P value text(susceptibilty)
Or beta2
%95 Ci[NR]
PlatformIllumina [288357]
CNVN
Mapped traitamyotrophic lateral sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000253
Study accessionGCST000406