Human SNP ID | rs16856202 |
---|---|
Human chromosome | chr1 |
Human SNP position | 232019405 |
Pig chromosome | chr14 |
Pig SNP position | 63076664 |
PubMed ID | 19451621 |
---|---|
Journal | Proc Natl Acad Sci U S A |
Link | www.ncbi.nlm.nih.gov/pubmed/19451621 |
Study | Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis. |
Disease/Trait | Amyotrophic lateral sclerosis |
Initial sample | 1,821 cases, 2,258 controls |
Replication sample | 538 cases, 556 controls |
Region | 1q42.2 |
Chromosome id | chr1 |
Chromosome position | 232019405 |
Reported gene | DISC1 |
Mapped gene | DISC1, TSNAX-DISC1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27185, 100303453 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16856202-C |
SNPs | rs16856202 |
Merged | 0 |
SNP id current | 16856202 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.04 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (susceptibilty) |
Or beta | 2 |
%95 Ci | [NR] |
Platform | Illumina [288357] |
CNV | N |
Mapped trait | amyotrophic lateral sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000253 |
Study accession | GCST000406 |