SNP Detail For rs16855418
1.Mapping Information
Human SNP ID rs16855418
Human chromosome chr2
Human SNP position 146327302
Pig chromosome chr15
Pig SNP position 5499959
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region2q22.3
Chromosome idchr2
Chromosome position146327302
Reported geneNR
Mapped geneLOC105373667
Upstream gene id
Downstream gene id
SNP gene ids105373667
Upstream gene distance
Downstream gene distance
SNP risk allelers16855418-?
SNPsrs16855418
Merged
SNP id current16855418
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(Latino)
Or beta0.8124
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957