SNP Detail For rs16851720
1.Mapping Information
Human SNP ID rs16851720
Human chromosome chr3
Human SNP position 141744456
Pig chromosome chr13
Pig SNP position 90383701
2.Annotation Information
PubMed ID22841784
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/22841784
StudyGenome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.
Disease/TraitHepatitis C induced liver fibrosis
Initial sample1,161 European ancestry HCV-infected individuals
Replication sample1,181 European ancestry HCV-infected individuals
Region3q23
Chromosome idchr3
Chromosome position141744456
Reported geneRNF7
Mapped geneRNF7
Upstream gene id
Downstream gene id
SNP gene ids9616
Upstream gene distance
Downstream gene distance
SNP risk allelers16851720-C
SNPsrs16851720
Merged0
SNP id current16851720
Contextintron_variant
Intergenic0
Allele frequency0.19
P value0.000000009
Pvalue mlog8.04575749056067
P value text(QTF)
Or beta
%95 Ci
PlatformIllumina [780650] (imputed)
CNVN
Mapped traithepatitis C infection, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003047, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST001623