SNP Detail For rs16850885
1.Mapping Information
Human SNP ID rs16850885
Human chromosome chr4
Human SNP position 74304423
Pig chromosome chr8
Pig SNP position 74376579
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IL-1beta)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region4q13.3
Chromosome idchr4
Chromosome position74304423
Reported geneEPGN, MTHFD2L
Mapped geneLOC105377276
Upstream gene id
Downstream gene id
SNP gene ids105377276
Upstream gene distance
Downstream gene distance
SNP risk allelers16850885-A
SNPsrs16850885
Merged0
SNP id current16850885
Contextupstream_gene_variant
Intergenic0
Allele frequency
P value0.000000007
Pvalue mlog8.15490195998574
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001533