SNP Detail For rs16850864
1.Mapping Information
Human SNP ID rs16850864
Human chromosome chr4
Human SNP position 74295107
Pig chromosome chr8
Pig SNP position 74388073
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted IL-1beta)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region4q13.3
Chromosome idchr4
Chromosome position74295107
Reported geneMTHFD2L
Mapped geneMTHFD2L, LOC105377276
Upstream gene id
Downstream gene id
SNP gene ids441024, 105377276
Upstream gene distance
Downstream gene distance
SNP risk allelers16850864-A
SNPsrs16850864
Merged0
SNP id current16850864
Contextintron_variant
Intergenic0
Allele frequency
P value0.000000007
Pvalue mlog8.15490195998574
P value text(EA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001533