Human SNP ID | rs16850360 |
---|---|
Human chromosome | chr4 |
Human SNP position | 74006728 |
Pig chromosome | chr8 |
Pig SNP position | 74152555 |
PubMed ID | 22916037 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22916037 |
Study | Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis. |
Disease/Trait | Metabolite levels |
Initial sample | 6,608 European ancestry individuals |
Replication sample | NA |
Region | 4q13.3 |
Chromosome id | chr4 |
Chromosome position | 74006728 |
Reported gene | CXCL5, PF4, PPBP |
Mapped gene | LOC105377274 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105377274 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16850360-? |
SNPs | rs16850360 |
Merged | 0 |
SNP id current | 16850360 |
Context | upstream_gene_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [~ 2000000] (imputed) |
CNV | N |
Mapped trait | coronary artery calcification |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004723 |
Study accession | GCST001639 |