SNP Detail For rs16850317
1.Mapping Information
Human SNP ID rs16850317
Human chromosome chr2
Human SNP position 165287904
Pig chromosome chr17
Pig SNP position 41358589
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (DPAL)
Initial sampleup to 2,501 European ancestry individuals
Replication sampleNA
Region2q24.3
Chromosome idchr2
Chromosome position165287904
Reported geneSCN2A
Mapped geneSCN2A
Upstream gene id
Downstream gene id
SNP gene ids6326
Upstream gene distance
Downstream gene distance
SNP risk allelers16850317-T
SNPsrs16850317
Merged0
SNP id current16850317
Contextintron_variant
Intergenic0
Allele frequency0.94
P value0.000005
Pvalue mlog5.30102999566398
P value text(Age 20-60 years)
Or beta0.3519
%95 Ci[0.20-0.50] unit decrease
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002129