Human SNP ID | rs16850317 |
---|---|
Human chromosome | chr2 |
Human SNP position | 165287904 |
Pig chromosome | chr17 |
Pig SNP position | 41358589 |
PubMed ID | 24024966 |
---|---|
Journal | J Clin Periodontol |
Link | www.ncbi.nlm.nih.gov/pubmed/24024966 |
Study | Genome-wide association study of chronic periodontitis in a general German population. |
Disease/Trait | Periodontitis (DPAL) |
Initial sample | up to 2,501 European ancestry individuals |
Replication sample | NA |
Region | 2q24.3 |
Chromosome id | chr2 |
Chromosome position | 165287904 |
Reported gene | SCN2A |
Mapped gene | SCN2A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6326 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16850317-T |
SNPs | rs16850317 |
Merged | 0 |
SNP id current | 16850317 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.94 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (Age 20-60 years) |
Or beta | 0.3519 |
%95 Ci | [0.20-0.50] unit decrease |
Platform | Affymetrix, Illumina [up to 17585496] (imputed) |
CNV | N |
Mapped trait | periodontitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000649 |
Study accession | GCST002129 |