SNP Detail For rs16840760
1.Mapping Information
Human SNP ID rs16840760
Human chromosome chr2
Human SNP position 204118831
Pig chromosome chr15
Pig SNP position 118818204
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2q33.3
Chromosome idchr2
Chromosome position204118831
Reported geneICOS
Mapped geneICOS - LOC105373845
Upstream gene id29851
Downstream gene id105373845
SNP gene ids
Upstream gene distance157252
Downstream gene distance354981
SNP risk allelers16840760-G
SNPsrs16840760
Merged0
SNP id current16840760
Contextintergenic_variant
Intergenic1
Allele frequency0.006
P value0.000001
Pvalue mlog6
P value text(AST/ALT)
Or beta0.03
%95 Ci[NR] unit increase
PlatformIllumina [899892]
CNVN
Mapped traitaspartate aminotransferase measurement, serum alanine aminotransferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004736, http://www.ebi.ac.uk/efo/EFO_0004735
Study accessionGCST001762