Human SNP ID | rs16830728 |
---|---|
Human chromosome | chr2 |
Human SNP position | 152124821 |
Pig chromosome | chr15 |
Pig SNP position | 157400229 |
PubMed ID | 24025145 |
---|---|
Journal | Breast Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24025145 |
Study | A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients. |
Disease/Trait | Adverse response to chemotherapy in breast cancer (alopecia) |
Initial sample | 303 Japanese ancestry cases, 880 Japanese ancestry controls |
Replication sample | 23 Japanese ancestry cases |
Region | 2q23.3 |
Chromosome id | chr2 |
Chromosome position | 152124821 |
Reported gene | STAM2 |
Mapped gene | STAM2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10254 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs16830728-T |
SNPs | rs16830728 |
Merged | 0 |
SNP id current | 16830728 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.59 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (Recessive) |
Or beta | 3.61 |
%95 Ci | [2.17-5.98] |
Platform | Illumina [555600] |
CNV | N |
Mapped trait | chemotherapy-induced alopecia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005400 |
Study accession | GCST002181 |