SNP Detail For rs16830728
1.Mapping Information
Human SNP ID rs16830728
Human chromosome chr2
Human SNP position 152124821
Pig chromosome chr15
Pig SNP position 157400229
2.Annotation Information
PubMed ID24025145
JournalBreast Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24025145
StudyA genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
Disease/TraitAdverse response to chemotherapy in breast cancer (alopecia)
Initial sample303 Japanese ancestry cases, 880 Japanese ancestry controls
Replication sample23 Japanese ancestry cases
Region2q23.3
Chromosome idchr2
Chromosome position152124821
Reported geneSTAM2
Mapped geneSTAM2
Upstream gene id
Downstream gene id
SNP gene ids10254
Upstream gene distance
Downstream gene distance
SNP risk allelers16830728-T
SNPsrs16830728
Merged0
SNP id current16830728
Contextintron_variant
Intergenic0
Allele frequency0.59
P value0.00000003
Pvalue mlog7.52287874528033
P value text(Recessive)
Or beta3.61
%95 Ci[2.17-5.98]
PlatformIllumina [555600]
CNVN
Mapped traitchemotherapy-induced alopecia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005400
Study accessionGCST002181