SNP Detail For rs16827466
1.Mapping Information
Human SNP ID rs16827466
Human chromosome chr1
Human SNP position 159679910
Pig chromosome chr4
Pig SNP position 98799835
2.Annotation Information
PubMed ID22939635
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22939635
StudyGenome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women.
Disease/TraitC-reactive protein
Initial sample8,280 African American female individuals, 3,548 Hispanic female individuals
Replication sample3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals
Region1q23.2
Chromosome idchr1
Chromosome position159679910
Reported geneFCER1A, DUSP23, OR10J1, APCS, DARC, IFI16, OR10J5, CRP, OR10J3, OLFML2B, FCRL6
Mapped geneAPCS - CRP
Upstream gene id325
Downstream gene id1401
SNP gene ids
Upstream gene distance91039
Downstream gene distance32379
SNP risk allelers16827466-T
SNPsrs16827466
Merged1
SNP id current16827466
Contextintergenic_variant
Intergenic1
Allele frequency0.178
P value4E-73
Pvalue mlog72.397940008672
P value text(AA Women)
Or beta0.4199
%95 Ci[0.37-0.46] unit increase
PlatformAffymetrix [up to 2203609] (imputed)
CNVN
Mapped traitC-reactive protein measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004458
Study accessionGCST001650