Human SNP ID | rs16827466 |
---|---|
Human chromosome | chr1 |
Human SNP position | 159679910 |
Pig chromosome | chr4 |
Pig SNP position | 98799835 |
PubMed ID | 22939635 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22939635 |
Study | Genome-wide association and population genetic analysis of C-reactive protein in African American and Hispanic American women. |
Disease/Trait | C-reactive protein |
Initial sample | 8,280 African American female individuals, 3,548 Hispanic female individuals |
Replication sample | 3,787 African American female individuals, 3,548 Hispanic female individuals, 5,656 European ancestry individuals |
Region | 1q23.2 |
Chromosome id | chr1 |
Chromosome position | 159679910 |
Reported gene | FCER1A, DUSP23, OR10J1, APCS, DARC, IFI16, OR10J5, CRP, OR10J3, OLFML2B, FCRL6 |
Mapped gene | APCS - CRP |
Upstream gene id | 325 |
Downstream gene id | 1401 |
SNP gene ids | |
Upstream gene distance | 91039 |
Downstream gene distance | 32379 |
SNP risk allele | rs16827466-T |
SNPs | rs16827466 |
Merged | 1 |
SNP id current | 16827466 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.178 |
P value | 4E-73 |
Pvalue mlog | 72.397940008672 |
P value text | (AA Women) |
Or beta | 0.4199 |
%95 Ci | [0.37-0.46] unit increase |
Platform | Affymetrix [up to 2203609] (imputed) |
CNV | N |
Mapped trait | C-reactive protein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004458 |
Study accession | GCST001650 |