SNP Detail For rs1682522
1.Mapping Information
Human SNP ID rs1682522
Human chromosome chr14
Human SNP position 87175493
Pig chromosome JH118924-1
Pig SNP position 284859
2.Annotation Information
PubMed ID26569114
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26569114
StudyGenome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas.
Disease/TraitStaphylococcus aureus nasal carriage (intermittent)
Initial sample97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals
Replication sampleNA
Region14q31.3
Chromosome idchr14
Chromosome position87175493
Reported geneGALC, LOC283585
Mapped geneLOC105370609
Upstream gene id
Downstream gene id
SNP gene ids105370609
Upstream gene distance
Downstream gene distance
SNP risk allelers1682522-T
SNPsrs1682522
Merged
SNP id current1682522
Contextintergenic_variant
Intergenic0
Allele frequency0.12
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta3.16
%95 Ci[1.99-4.99]
PlatformAffymetrix, Illumina [at least 603042] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003181