Human SNP ID | rs1682522 |
---|---|
Human chromosome | chr14 |
Human SNP position | 87175493 |
Pig chromosome | JH118924-1 |
Pig SNP position | 284859 |
PubMed ID | 26569114 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26569114 |
Study | Genome-Wide Association Study of Staphylococcus aureus Carriage in a Community-Based Sample of Mexican-Americans in Starr County, Texas. |
Disease/Trait | Staphylococcus aureus nasal carriage (intermittent) |
Initial sample | 97 Mexican American intermittent carrier individuals, 620 Mexican American non-carrier individuals |
Replication sample | NA |
Region | 14q31.3 |
Chromosome id | chr14 |
Chromosome position | 87175493 |
Reported gene | GALC, LOC283585 |
Mapped gene | LOC105370609 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105370609 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1682522-T |
SNPs | rs1682522 |
Merged | |
SNP id current | 1682522 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.12 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 3.16 |
%95 Ci | [1.99-4.99] |
Platform | Affymetrix, Illumina [at least 603042] (imputed) |
CNV | N |
Mapped trait | |
Mapped trait URI | |
Study accession | GCST003181 |