Human SNP ID | rs1678542 |
---|---|
Human chromosome | chr12 |
Human SNP position | 57574932 |
Pig chromosome | JH118928-1 |
Pig SNP position | 75356 |
PubMed ID | 18794853 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18794853 |
Study | Common variants at CD40 and other loci confer risk of rheumatoid arthritis. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 3,393 European ancestry cases, 12,460 European ancestry controls |
Replication sample | 3,929 European ancestry cases, 5,807 European ancestry controls |
Region | 12q13.3 |
Chromosome id | chr12 |
Chromosome position | 57574932 |
Reported gene | KIF5A, PIP4K2C |
Mapped gene | KIF5A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3798 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1678542-C |
SNPs | rs1678542 |
Merged | 0 |
SNP id current | 1678542 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 0.00000009 |
Pvalue mlog | 7.04575749056067 |
P value text | |
Or beta | 1.12 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [at least 315971] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST000232 |
PubMed ID | 24449572 |
Journal | Arthritis Rheumatol |
Link | www.ncbi.nlm.nih.gov/pubmed/24449572 |
Study | Novel rheumatoid arthritis susceptibility locus at 22q12 identified in an extended UK genome-wide association study. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 3,034 European ancestry cases, 5,271 European ancestry controls |
Replication sample | 4,726 European ancestry cases, 2,625 European ancestry controls |
Region | 12q13.3 |
Chromosome id | chr12 |
Chromosome position | 57574932 |
Reported gene | KIF5A |
Mapped gene | KIF5A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3798 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1678542-? |
SNPs | rs1678542 |
Merged | 0 |
SNP id current | 1678542 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.12-1.28] |
Platform | Affymetrix, Illumina [1831729] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002323 |