SNP Detail For rs1678443
1.Mapping Information
Human SNP ID rs1678443
Human chromosome chr3
Human SNP position 138378692
Pig chromosome chr13
Pig SNP position 86790092
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region3q22.3
Chromosome idchr3
Chromosome position138378692
Reported geneNR
Mapped geneMRAS
Upstream gene id
Downstream gene id
SNP gene ids22808
Upstream gene distance
Downstream gene distance
SNP risk allelers1678443-?
SNPsrs1678443
Merged0
SNP id current1678443
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279