SNP Detail For rs1668873
1.Mapping Information
Human SNP ID rs1668873
Human chromosome chr1
Human SNP position 205266862
Pig chromosome chr9
Pig SNP position 72166907
2.Annotation Information
PubMed ID19820697
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19820697
StudyA genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium.
Disease/TraitMean platelet volume
Initial sample4,627 European ancestry individuals
Replication sample9,316 European ancestry individuals
Region1q32.1
Chromosome idchr1
Chromosome position205266862
Reported geneTMCC2
Mapped geneTMCC2
Upstream gene id
Downstream gene id
SNP gene ids9911
Upstream gene distance
Downstream gene distance
SNP risk allelers1668873-G
SNPsrs1668873
Merged0
SNP id current1668873
Contextintron_variant
Intergenic0
Allele frequencyNR
P value1E-20
Pvalue mlog20
P value text
Or beta0.01
%95 Ci[0.01-0.014] fl increase
PlatformAffymetrix, Illumina [~ 2110000] (imputed)
CNVN
Mapped traitmean platelet volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004584
Study accessionGCST000497