Human SNP ID | rs1668873 |
---|---|
Human chromosome | chr1 |
Human SNP position | 205266862 |
Pig chromosome | chr9 |
Pig SNP position | 72166907 |
PubMed ID | 19820697 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19820697 |
Study | A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium. |
Disease/Trait | Mean platelet volume |
Initial sample | 4,627 European ancestry individuals |
Replication sample | 9,316 European ancestry individuals |
Region | 1q32.1 |
Chromosome id | chr1 |
Chromosome position | 205266862 |
Reported gene | TMCC2 |
Mapped gene | TMCC2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9911 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1668873-G |
SNPs | rs1668873 |
Merged | 0 |
SNP id current | 1668873 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 1E-20 |
Pvalue mlog | 20 |
P value text | |
Or beta | 0.01 |
%95 Ci | [0.01-0.014] fl increase |
Platform | Affymetrix, Illumina [~ 2110000] (imputed) |
CNV | N |
Mapped trait | mean platelet volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004584 |
Study accession | GCST000497 |