SNP Detail For rs1668871
1.Mapping Information
Human SNP ID rs1668871
Human chromosome chr1
Human SNP position 205268009
Pig chromosome chr9
Pig SNP position 72167963
2.Annotation Information
PubMed ID22139419
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/22139419
StudyNew gene functions in megakaryopoiesis and platelet formation.
Disease/TraitPlatelet count
Initial sample47,005 European ancestry individuals, 1,661 Val Borbera individuals
Replication sampleUp to 18,838 European ancestry individuals
Region1q32.1
Chromosome idchr1
Chromosome position205268009
Reported geneTMCC2
Mapped geneTMCC2
Upstream gene id
Downstream gene id
SNP gene ids9911
Upstream gene distance
Downstream gene distance
SNP risk allelers1668871-C
SNPsrs1668871
Merged0
SNP id current1668871
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000000003
Pvalue mlog13.5228787452803
P value text
Or beta2.804
%95 Ci[2.08-3.53] 10^9/l increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitplatelet count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004309
Study accessionGCST001337