SNP Detail For rs164898
1.Mapping Information
Human SNP ID rs164898
Human chromosome chr1
Human SNP position 91104132
Pig chromosome chr4
Pig SNP position 137270146
2.Annotation Information
PubMed ID20694148
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/20694148
StudyA genome-wide association study of the metabolic syndrome in Indian Asian men.
Disease/TraitMetabolic syndrome
Initial sample2,554 Indian Asian ancestry individuals
Replication sample2,240 Indian Asian ancestry individuals
Region1p22.2
Chromosome idchr1
Chromosome position91104132
Reported geneZNF644
Mapped geneRPL5P6 - HFM1
Upstream gene id646784
Downstream gene id164045
SNP gene ids
Upstream gene distance79265
Downstream gene distance156634
SNP risk allelers164898-?
SNPsrs164898
Merged0
SNP id current164898
Contextintergenic_variant
Intergenic1
Allele frequency0.27
P value0.000006
Pvalue mlog5.22184874961635
P value text(WHR)
Or beta
%95 Ci
PlatformIllumina [308011]
CNVN
Mapped traitwaist-hip ratio, metabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST000753