SNP Detail For rs1642764
1.Mapping Information
Human SNP ID rs1642764
Human chromosome chr17
Human SNP position 7654516
Pig chromosome chr12
Pig SNP position 55244665
2.Annotation Information
PubMed ID25129146
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25129146
StudyJoint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.
Disease/TraitEsophageal squamous cell carcinoma
Initial sample5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls
Replication sample9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry controls
Region17p13.1
Chromosome idchr17
Chromosome position7654516
Reported geneTP53, ATP1B2
Mapped geneATP1B2
Upstream gene id
Downstream gene id
SNP gene ids482
Upstream gene distance
Downstream gene distance
SNP risk allelers1642764-C
SNPsrs1642764
Merged0
SNP id current1642764
Contextintron_variant
Intergenic0
Allele frequency0.501
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text
Or beta1.14
%95 Ci[1.1-1.18]
PlatformAffymetrix, Illumina [7556215] (imputed)
CNVN
Mapped traitesophageal squamous cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005922
Study accessionGCST002568