Human SNP ID | rs163879 |
---|---|
Human chromosome | chr11 |
Human SNP position | 30930127 |
Pig chromosome | chr2 |
Pig SNP position | 32223741 |
PubMed ID | 22504420 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504420 |
Study | Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. |
Disease/Trait | Bone mineral density |
Initial sample | Up to 32,961 European and East Asian ancestry individuals |
Replication sample | Up to 50,933 European and East Asian ancestry individuals |
Region | 11p14.1 |
Chromosome id | chr11 |
Chromosome position | 30930127 |
Reported gene | DCDC5 |
Mapped gene | DCDC5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100506627 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs163879-T |
SNPs | rs163879 |
Merged | 0 |
SNP id current | 163879 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.68 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | (LSBMD) |
Or beta | 0.04 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST001482 |