SNP Detail For rs163879
1.Mapping Information
Human SNP ID rs163879
Human chromosome chr11
Human SNP position 30930127
Pig chromosome chr2
Pig SNP position 32223741
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region11p14.1
Chromosome idchr11
Chromosome position30930127
Reported geneDCDC5
Mapped geneDCDC5
Upstream gene id
Downstream gene id
SNP gene ids100506627
Upstream gene distance
Downstream gene distance
SNP risk allelers163879-T
SNPsrs163879
Merged0
SNP id current163879
Contextintron_variant
Intergenic0
Allele frequency0.68
P value0.00000000002
Pvalue mlog10.698970004336
P value text(LSBMD)
Or beta0.04
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482