SNP Detail For rs1631486
1.Mapping Information
Human SNP ID rs1631486
Human chromosome chr18
Human SNP position 55359126
Pig chromosome chr1
Pig SNP position 115252954
2.Annotation Information
PubMed ID23563609
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563609
StudyGenome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.
Disease/TraitObesity (early onset extreme)
Initial sample1,509 European ancestry cases, 5,380 European ancestry controls
Replication sample971 European ancestry cases, 1,990 European ancestry controls
Region18q21.2
Chromosome idchr18
Chromosome position55359126
Reported geneTCF4
Mapped geneTCF4
Upstream gene id
Downstream gene id
SNP gene ids6925
Upstream gene distance
Downstream gene distance
SNP risk allelers1631486-A
SNPsrs1631486
Merged0
SNP id current1631486
Contextintron_variant
Intergenic0
Allele frequency0.31
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.18
%95 Ci[1.10-1.26]
PlatformAffymetrix [~ 2000000] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001957