SNP Detail For rs1625579
1.Mapping Information
Human SNP ID rs1625579
Human chromosome chr1
Human SNP position 98037378
Pig chromosome chr4
Pig SNP position 131558210
2.Annotation Information
PubMed ID21926974
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926974
StudyGenome-wide association study identifies five new schizophrenia loci.
Disease/TraitSchizophrenia
Initial sample9,394 European ancestry cases, 12,462 European ancestry controls
Replication sample8,442 European ancestry cases, 21,397 European ancestry controls
Region1p21.3
Chromosome idchr1
Chromosome position98037378
Reported geneMIR137
Mapped geneMIR137HG
Upstream gene id
Downstream gene id
SNP gene ids400765
Upstream gene distance
Downstream gene distance
SNP risk allelers1625579-T
SNPsrs1625579
Merged0
SNP id current1625579
Contextintron_variant
Intergenic0
Allele frequency0.8
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.12
%95 Ci[1.09-1.16]
PlatformAffymetrix, Illumina [1252901] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001242
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region1p21.3
Chromosome idchr1
Chromosome position98037378
Reported geneDPYD, MIR137
Mapped geneMIR137HG
Upstream gene id
Downstream gene id
SNP gene ids400765
Upstream gene distance
Downstream gene distance
SNP risk allelers1625579-?
SNPsrs1625579
Merged0
SNP id current1625579
Contextintron_variant
Intergenic0
Allele frequency0.801
P value0.00000000002
Pvalue mlog10.698970004336
P value text(Modelling analysis)
Or beta
%95 Ci
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877