SNP Detail For rs1620921
1.Mapping Information
Human SNP ID rs1620921
Human chromosome chr6
Human SNP position 160776055
Pig chromosome chr1
Pig SNP position 8741653
2.Annotation Information
PubMed ID25575512
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25575512
StudyEvidence for several independent genetic variants affecting lipoprotein (a) cholesterol levels.
Disease/TraitLipoprotein (a) - cholesterol levels
Initial sample1,376 Old Order Amish individuals
Replication sampleNA
Region6q26
Chromosome idchr6
Chromosome position160776055
Reported geneintergenic
Mapped genePLG - LOC105378091
Upstream gene id5340
Downstream gene id105378091
SNP gene ids
Upstream gene distance22001
Downstream gene distance245
SNP risk allelers1620921-?
SNPsrs1620921
Merged0
SNP id current1620921
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta
%95 Ci
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitlipoprotein A measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006925
Study accessionGCST002746