SNP Detail For rs161645
1.Mapping Information
Human SNP ID rs161645
Human chromosome chr5
Human SNP position 104734216
Pig chromosome chr2
Pig SNP position 114850372
2.Annotation Information
PubMed ID23290196
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23290196
StudyA genome-wide association study of depressive symptoms.
Disease/TraitDepression (quantitative trait)
Initial sampleup to 34,549 European ancestry individuals
Replication sampleup to 16,709 European ancestry individuals
Region5q21.2
Chromosome idchr5
Chromosome position104734216
Reported geneNUDT12
Mapped geneLOC105379109
Upstream gene id
Downstream gene id
SNP gene ids105379109
Upstream gene distance
Downstream gene distance
SNP risk allelers161645-A
SNPsrs161645
Merged0
SNP id current161645
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2391896] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST001802