SNP Detail For rs1600249
1.Mapping Information
Human SNP ID rs1600249
Human chromosome chr8
Human SNP position 11502129
Pig chromosome chr14
Pig SNP position 15883893
2.Annotation Information
PubMed ID21452313
JournalArthritis Rheum
Linkwww.ncbi.nlm.nih.gov/pubmed/21452313
StudyGenome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.
Disease/TraitRheumatoid arthritis
Initial sample801 Korean ancestry cases, 757 Korean ancestry controls
Replication sample718 Korean ancestry cases, 719 Korean ancestry controls
Region8p23.1
Chromosome idchr8
Chromosome position11502129
Reported geneBLK
Mapped geneBLK
Upstream gene id
Downstream gene id
SNP gene ids640
Upstream gene distance
Downstream gene distance
SNP risk allelers1600249-?
SNPsrs1600249
Merged0
SNP id current1600249
Contextintron_variant
Intergenic0
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.3
%95 Ci[1.16-1.45]
PlatformIllumina [441398]
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST001022